1286 - Unknown storage engine 'InnoDB'

Question

I am trying to use roundcube and it recently just broke. I don't know if this is due to a MySQL update that happened recently or not but in phpMyAdmin I get the following error if I try and view a table:

1286 - Unknown storage engine 'InnoDB'

and

mysql> SHOW ENGINES;
+--------------------+---------+----------------------------------------------------------------+--------------+------+------------+
| Engine             | Support | Comment                                                        | Transactions | XA   | Savepoints |
+--------------------+---------+----------------------------------------------------------------+--------------+------+------------+
| MRG_MYISAM         | YES     | Collection of identical MyISAM tables                          | NO           | NO   | NO         |
| CSV                | YES     | CSV storage engine                                             | NO           | NO   | NO         |
| MyISAM             | DEFAULT | MyISAM storage engine                                          | NO           | NO   | NO         |
| BLACKHOLE          | YES     | /dev/null storage engine (anything you write to it disappears) | NO           | NO   | NO         |
| FEDERATED          | NO      | Federated MySQL storage engine                                 | NULL         | NULL | NULL       |
| PERFORMANCE_SCHEMA | YES     | Performance Schema                                             | NO           | NO   | NO         |
| ARCHIVE            | YES     | Archive storage engine                                         | NO           | NO   | NO         |
| MEMORY             | YES     | Hash based, stored in memory, useful for temporary tables      | NO           | NO   | NO         |
+--------------------+---------+----------------------------------------------------------------+--------------+------+------------+
8 rows in set (0.00 sec)

and

[mysqld]
default-storage-engine=MyISAM
local-infile=0
symbolic-links=0
skip-networking
max_connections = 500
max_user_connections = 20
key_buffer = 512M
myisam_sort_buffer_size = 64M
join_buffer_size = 64M
read_buffer_size = 12M
sort_buffer_size = 12M
read_rnd_buffer_size = 12M
table_cache = 2048
thread_cache_size = 16K
wait_timeout = 30
connect_timeout = 15
tmp_table_size = 64M
max_heap_table_size = 64M
max_allowed_packet = 64M
max_connect_errors = 10
query_cache_limit = 1M
query_cache_size = 64M
query_cache_type = 1
low_priority_updates=1
concurrent_insert=ALWAYS
log-error=/var/log/mysql/error.log
tmpdir=/home/mysqltmp
myisam_repair_threads=4
[mysqld_safe]
open_files_limit = 8192
log-error=/var/log/mysql/error.log

[mysqldump]
quick
max_allowed_packet = 512M

[myisamchk]
key_buffer = 64M
sort_buffer = 64M
read_buffer = 16M
write_buffer = 16M

Ideas as to how to fix? It used to work just fine.