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I apologize in advance for a long post but I have had it up to here with this error of having to delete LS configuration and starting it over for any DB thats got this error.

I have LS setup on 3 win2k8r2 servers(pri,sec,monitor) with 100 databases transactions backed up and shipped from the primary to secondary and monitored by monitor. Back ups and copies are run every 15min and then the ones older than 24hrs are deleted. Some DBs are very active and some not so much but shipped regardless for uniformity sake(basically to make secondary server identical to primary). Some DBs are for SP2010 and majority for inhouse app.

The issue is that after all LS configs are setup, all works well for about 3 to 4 days then i go to the Transaction LS Status report on the secondary, I see that randomly some LS jobs have an Alert Status because the time since last copy is over 45min so no restore has occured. This seems random and the only errors i see is from an SP2010 DB(WebAnalyticsServiceApplication_ReportingDB_77a60938_##########) which I belive is a reports db that gets created weekly and LS cannot just figure which the last copy to backup or to restore is. I posted here regarding that and i have yet to find a permanent solution. For my main error(time since last copy) i have not seen anything that could have caused that and i dont get any messages(even though some alert statuses have been ignored for 3 days). Anyway, I would really appreciate any input on understanding whats causing this and how i could fix it. Thanks.

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Are the target databases in use at all (standby)? – Jon Seigel Jul 9 '13 at 19:58
I belive is a reports db that gets created weekly and LS cannot just figure which the last copy to backup or to restore is when a database is recreated, you have to re-setup logshipping from scratch. What is the error you are getting ? – Kin Jul 9 '13 at 21:21
@Kin the error regarding my previous post with the SP reports db is this Cannot open backup device '\\SQLSecondary\LS-BackUP\WebAnalyticsServiceApplication_ReportingDB_77a60938-###‌​#######.trn'. Operating system error 2(The system cannot find the file specified.). RESTORE HEADERONLY is terminating abnormally. But for this post, Could not find a log backup file that could be applied to secondary database 'InHouseDB'. when I run 'SELECT * FROM [msdb].[dbo].[log_shipping_monitor_history_detail]' on the monitor server – shilezi Jul 10 '13 at 13:47
@JonSeigel Nope, they're all for warm DR and are Standby/Read-Only – shilezi Jul 10 '13 at 13:51
@Kin On the Primary server using the LS GUI, I chose to "Delete files older than: 24hrs" and the Backup job schedule to occur every day every 15 minute(s) between 12:00:00 AM and 11:59:00 PM. And on the Secondary server, files are copied using the same/default schedule and i chose the "Delete copied files after:24hrs". Once initialized, i watch the backup, copy and restore happen hassle free and 3 days later, 4 or 5 of 100 dbs won't copy. – shilezi Jul 10 '13 at 14:13

Restarting both the source and destination servers housing the sql engines seemed to fix the issue. its been a week and all backup, copy and restore has no issues except for just that one SharePoint reporting db WebAnalyticsServiceApplication_ReportingDB_77a60938-####-####-####-##########. Thanks to everyone for their input, as I at least came out of this more knowledgeable.

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