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I upgraded to mysql 5.6 from 5.5, and now my logs are littered with such messages on startup

I found a possible solution here, but it does not seem official. http://forums.mysql.com/read.php?22,578559,579891#msg-579891

2013-12-06 21:08:00 7f87b1d26700 InnoDB: Error: Table "mysql"."innodb_table_stats" not found.
2013-12-06 21:08:00 7f87b1d26700 InnoDB: Recalculation of persistent statistics requested for table "drupal"."sessions" but the required persistent statistics storage is not present or is corrupted. Using transient stats instead.
2013-12-06 21:08:07 7f903c09c700 InnoDB: Error: Table "mysql"."innodb_table_stats" not found.

Any official solutions or 100% fixes?

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repeat with thread in stackoverflow.com/questions/15767652/… You can download the .sql file to create the table by yourself. –  Ben Lin Dec 6 '13 at 23:46

2 Answers 2

up vote 8 down vote accepted

I had addressed issue before : Cannot open table mysql/innodb_index_stats

Basically, these created for you when you directly install MySQL 5.6. Apparently, upgrading from MySQL 5.5 does not include making these 5 tables available when going to MySQL 5.6. Here are the scripts to make them:

innodb_index_stats

USE mysql
CREATE TABLE `innodb_index_stats` (
  `database_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `table_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `index_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `last_update` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
  `stat_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `stat_value` bigint(20) unsigned NOT NULL,
  `sample_size` bigint(20) unsigned DEFAULT NULL,
  `stat_description` varchar(1024) COLLATE utf8_bin NOT NULL,
  PRIMARY KEY (`database_name`,`table_name`,`index_name`,`stat_name`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin STATS_PERSISTENT=0;

innodb_table_stats

USE mysql
CREATE TABLE `innodb_table_stats` (
  `database_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `table_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `last_update` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
  `n_rows` bigint(20) unsigned NOT NULL,
  `clustered_index_size` bigint(20) unsigned NOT NULL,
  `sum_of_other_index_sizes` bigint(20) unsigned NOT NULL,
  PRIMARY KEY (`database_name`,`table_name`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin STATS_PERSISTENT=0;

slave_master_info

USE mysql
CREATE TABLE `slave_master_info` (
  `Number_of_lines` int(10) unsigned NOT NULL COMMENT 'Number of lines in the file.',
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the master binary log currently being read from the master.',
  `Master_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The master log position of the last read event.',
  `Host` char(64) CHARACTER SET utf8 COLLATE utf8_bin NOT NULL DEFAULT '' COMMENT 'The host name of the master.',
  `User_name` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The user name used to connect to the master.',
  `User_password` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The password used to connect to the master.',
  `Port` int(10) unsigned NOT NULL COMMENT 'The network port used to connect to the master.',
  `Connect_retry` int(10) unsigned NOT NULL COMMENT 'The period (in seconds) that the slave will wait before trying to reconnect to the master.',
  `Enabled_ssl` tinyint(1) NOT NULL COMMENT 'Indicates whether the server supports SSL connections.',
  `Ssl_ca` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The file used for the Certificate Authority (CA) certificate.',
  `Ssl_capath` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The path to the Certificate Authority (CA) certificates.',
  `Ssl_cert` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the SSL certificate file.',
  `Ssl_cipher` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the cipher in use for the SSL connection.',
  `Ssl_key` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the SSL key file.',
  `Ssl_verify_server_cert` tinyint(1) NOT NULL COMMENT 'Whether to verify the server certificate.',
  `Heartbeat` float NOT NULL,
  `Bind` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'Displays which interface is employed when connecting to the MySQL server',
  `Ignored_server_ids` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The number of server IDs to be ignored, followed by the actual server IDs',
  `Uuid` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The master server uuid.',
  `Retry_count` bigint(20) unsigned NOT NULL COMMENT 'Number of reconnect attempts, to the master, before giving up.',
  `Ssl_crl` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The file used for the Certificate Revocation List (CRL)',
  `Ssl_crlpath` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The path used for Certificate Revocation List (CRL) files',
  `Enabled_auto_position` tinyint(1) NOT NULL COMMENT 'Indicates whether GTIDs will be used to retrieve events from the master.',
  PRIMARY KEY (`Host`,`Port`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Master Information';

slave_relay_log_info

USE mysql
CREATE TABLE `slave_relay_log_info` (
  `Number_of_lines` int(10) unsigned NOT NULL COMMENT 'Number of lines in the file or rows in the table. Used to version table definitions.',
  `Relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the current relay log file.',
  `Relay_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The relay log position of the last executed event.',
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the master binary log file from which the events in the relay log file were read.',
  `Master_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The master log position of the last executed event.',
  `Sql_delay` int(11) NOT NULL COMMENT 'The number of seconds that the slave must lag behind the master.',
  `Number_of_workers` int(10) unsigned NOT NULL,
  `Id` int(10) unsigned NOT NULL COMMENT 'Internal Id that uniquely identifies this record.',
  PRIMARY KEY (`Id`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Relay Log Information';

slave_worker_info

USE mysql
CREATE TABLE `slave_worker_info` (
  `Id` int(10) unsigned NOT NULL,
  `Relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Relay_log_pos` bigint(20) unsigned NOT NULL,
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Master_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Checkpoint_relay_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Checkpoint_master_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_seqno` int(10) unsigned NOT NULL,
  `Checkpoint_group_size` int(10) unsigned NOT NULL,
  `Checkpoint_group_bitmap` blob NOT NULL,
  PRIMARY KEY (`Id`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Worker Information';

ALTERNATIVE

Another workaround would be to create the script from a MySQL 5.6 instance.

Step 01 : Goto a DB Server running MySQL 5.6, or install MySQL 5.6 on a test machine.

Step 02 : mysqldump these 5 tables to a text file

INNODB_TABLES="innodb_index_stats"
INNODB_TABLES="${INNODB_TABLES} innodb_table_stats"
INNODB_TABLES="${INNODB_TABLES} slave_master_info"
INNODB_TABLES="${INNODB_TABLES} slave_relay_log_info"
INNODB_TABLES="${INNODB_TABLES} slave_worker_info"
mysqldump -uroot mysql ${INNODB_TABLES} > InnoDB_MySQL_Tables.sql

Then, you can run InnoDB_MySQL_Tables.sql on any DB Server running MySQL 5.5 before upgrading.

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1  
Solved my problem on a Linux upgrade from 5.5 - Oracle's 5.6. Had to drop some phantom tables, stop mysql, move the bad ibd files from /var/lib/mysql/mysql, restart mysql, then run Rolando's statements.... and Yay no more startup errors and hopefully no more instability. Rolando you're amazing. –  glyph Apr 10 at 0:53

Rolando's answer worked for me with some additions. I had the same problem, with these 5 tables showing via SHOW TABLES, but SELECT or other operations on the table resulted in table not found.

To resolve the issue, using Rolando's answer, I needed to:

  • DROP TABLE <tablename> -- all 5 tables

  • In the file system, delete the remaining .ibd files (the .frm files were removed by DROP TABLE)

  • I then stopped and started the mysqld instance (don't know if it was needed - made me happy)

  • The CREATE TABLE statements Rolando provided then ran without issue.

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