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Tuning Mongo (TokuMX) for fastest bulk reads

What options do I have for tuning MongoDB / TokuMX for reading the results of queries with large result sets? I'm currently on a single server (no sharding) with the data on an SSD drive. My queries ...
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Is it always faster to create indexes after loading data?

I have a large number of records (~1 billion) that I need to load into MongoDB (actually TokuMX, but whatever). I have about 6 different indices I need to create on the collection. Is it always faster ...