Yes, statistics based on indexes can be used to help with query plan creation even if the underlying index isn't used to access data in the plan. Consider that the query optimizer may consider many different query plans and data access paths while creating a query plan. The compiled query plan may end up not using one of the indexes that was considered. That certainly doesn't mean that any query plan that benefited from the statistics of that index needs to be invalidated, right?
An example might be helpful as well. First I'll throw about 6.5 million rows into a heap:
DROP TABLE IF EXISTS dbo.A_GOOD_HEAP;
CREATE TABLE dbo.A_GOOD_HEAP (
INDEXED_COLUMN BIGINT NULL,
OTHER_COLUMN BIGINT NULL
);
INSERT INTO dbo.A_GOOD_HEAP WITH (TABLOCK)
SELECT CASE WHEN t.RN % 10 = 0 THEN 0 ELSE 1 END
, RN
FROM
(
SELECT ROW_NUMBER() OVER (ORDER BY (SELECT NULL)) RN
FROM master..spt_values t1
CROSS JOIN master..spt_values t2
) t;
Next I'll create an index on one of the columns and look at the histogram for the statistics object that is automatically created.
CREATE INDEX IX ON dbo.A_GOOD_HEAP (INDEXED_COLUMN);
DBCC SHOW_STATISTICS ('A_GOOD_HEAP', 'IX');
Here's the histogram:
╔══════════════╦════════════╦═════════╦═════════════════════╦════════════════╗
║ RANGE_HI_KEY ║ RANGE_ROWS ║ EQ_ROWS ║ DISTINCT_RANGE_ROWS ║ AVG_RANGE_ROWS ║
╠══════════════╬════════════╬═════════╬═════════════════════╬════════════════╣
║ 0 ║ 0 ║ 645160 ║ 0 ║ 1 ║
║ 1 ║ 0 ║ 5806440 ║ 0 ║ 1 ║
╚══════════════╩════════════╩═════════╩═════════════════════╩════════════════╝
Based on the statistics there are 5806440 rows in the table with a value of 1 for INDEXED_COLUMN
. Now consider this query:
SELECT COUNT(DISTINCT OTHER_COLUMN)
FROM dbo.A_GOOD_HEAP
WHERE INDEXED_COLUMN = 1;
The query optimizer has a few different access paths for the data. It also has a few choices for how to calculate the aggregate. One of the considerations for the picking an algorithm for the agggregate is the cardinality estimate of the data. Here's a screenshot of the query plan:

Note that the estimate matches the histogram exactly even though the index isn't used to access data. Newer versions of SQL Server show which statistics were considered during optimization in the query plan. You can see that the statistic associated with the index was used:

However, the sys.dm_db_index_usage_stats
dmv doesn't report any end user activity on the index.