I have a simple Master to Slave MySQL Replication setup for offline backups, and I am looking for some guidance on ways to investigate two potentially related issues:

  1. An error reading the relay_log on the replication server every time I run MYSQLDUMP. How concerned should I be about this and Is there a way to prevent it? Example error output is provided below. [Edit: This link https://lists.mysql.com/replication/413 would seem to indicate it is expected behaviour.]
  2. An error replicating data manifesting as a duplicate primary key error. This has me very concerned as it stops replication dead, signifies data corruption, and I don't understand the cause. There were 30+ duplicate keys in 2 different tables. The keys are auto-incremented and the code doesn't seem to be doing anything silly (it only inserts records in one place using a simple INSERT INTO statement for both tables).

All the pertinent configuration information follows:


MySQL 5.5.6
Replicating database of about 100MB when exported as a MySQL logical copy.
Using MyISAM engine;

Notes: Upgrading MySQL and the database tables is on my to-do list (honest).

Master Server Config:

log-bin= mysql-bin 
relay-log = mysql-relay-bin 
relay-log-index = mysql-relay-bin.index 
binlog_format = MIXED

Notes: I strongly suspect relay-log isn't needed as this is the Master; also suspect expire-logs won't delete until the MySQL server restarts; bintologdb specified because there are lots of dbases on there and only the one is needed for replication; MIXED chosen because many of the SQL Statements used by the software were showing up errors warning of corruption.

Slave Server Config:

log_bin_index = /home/binlogs/mysql-bin 
binlog_format = MIXED    


#SSL for mysql direct connections not used by replication.

Notes: Binary logs are pointing at the /home folder as the system mount only as 50GB.

Cron job used to investigate MYSQLDUMP:

mysqldump -u root --dump-slave --lock-all-tables --opt bdtoreplicate | gzip > /pathto/backups/dbtoreplicate_`date +\%FT\%T`.sql.gz

Notes: I've removed --lock-all-tables from this command now, on the understanding dump-slave stops the slave anyway and like master-data locks the tables anyway. And I thought it might be causing an issue.

Error reported whenever MySQL dump run:

180802 12:00:01 [Note] Error reading relay log event: slave SQL thread was killed
180802 12:00:15 [Note] Slave SQL thread initialized, starting replication in log 'mysql-bin.000002' at position 96745620, relay log '/home/binlogs/mysql-relay-bin.000008' position: 30630699

Notes: This message appears in the mysql error logs consistently every hour when the mysqldump is run. Also appears when the command is run from the command line.

The Problem:

180802 12:39:08 [ERROR] Slave SQL: Error 'Duplicate entry '81759' for key 'PRIMARY'' on query. Default database: 'databaetoreplicate'. Query: 'INSERT INTO changednameoftable SET some_id = '212',active = 1, date_created = NOW()', Error_code: 1062

Notes: This error stops replication. The code doesn't appear to be doing anything silly. There were quite a few duplicates (30+). The error took 5 days to occur. My hunch was that it was caused by MySQLDump locking the database and replication failing to restart at the correct co-ordinates (hence the duplicate keys), but on reflection 39 minutes seems along time to wait before replication discovers a sync error and throws an error.

Similar problems I've reviewed:

Notes: My set-up worked fine for 5 days before showing the error so I don't think it's an initial configuration issue, so resetting/resyncing/restarting wouldn't seem to solve anything; sql_slave_skip_counter is all very well but won't prevent the issue re-appearing.

Advice and thoughts welcomed, especially on discovering how the keys are duplicated.

  • That really smacks of executing the same query twice. That is all too easy to do when you start reading the logs. Please note that the statements in the relay log are in the order of COMMIT, not the order of start. Also GTIDs (if you have them turned on) adds another wrinkle. – Rick James Aug 21 '18 at 20:23

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