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As you were hinted in comments above, your RBAR approach might be very inefficient. Consider the suggestions there.

Also, I am not going into details about the different approaches of UPSERT, as it is a very broad topic, especially when one wants to do concurrency-safe. PostgreSQL 9.5 helps a lot in this regard.

So, to your actual question: it is not directly possible writing PL/pgSQL 'commands' interspersed with bash, but the task is definitely solvable.

For this, you need to define a function like this:

CREATE OR REPLACE FUNCTION dynamic_upsert(
    table_to_upsert name, 
    key_column name, 
    value_column name, 
    key integer, 
    value text
)
RETURNS void
LANGUAGE plpgsql
AS $BODY$
BEGIN
    EXECUTE $$ UPDATE $$ || quote_ident(table_to_upsert) || 
            $$ SET $$ || quote_ident(value_column) || $$ = $2 
               WHERE $$ || quote_ident(key_column) || $$  = $1 $$ 
        USING key, value;
END;
$BODY$;

Please note that this is fully dynamic in that you can choose any table, match against any column of it and modify any (other) column. The type of the key (integer) and the value (text) are fixed, though.

Now you can call this from a shell script like

psql -h $DBHOST -U $DBUSER -d $DBNAME \
     -c "SELECT dynamic_upsert($TABLE, $KEY_COL, $VAL_COL, $key, $value)"

If you are still RBARing, this will produce an additional overhead of connecting to the database for every single change, so be patient (or set up a connection pool).

Notes:

• using concatenation, one has to be absolutely sure to quote the object names properly. This is here done using quote_ident(), which is the way to go if you are concatenating the dynamic statement. In newer versions (from 9.1), one would use the format() function to avoid the mess:

EXECUTE format($$ UPDATE %I SET %I = $2 WHERE %I = $1$$, 
               table_to_upsert, value_column, key_column) 
USING key, value;

• here I am using dollar quoting when building the dynamic query. This allows me to use 'normal' syntax, as opposed to multiplicating single quotes, for example (not present in this example). This way most editors will highlight the statements nicely.