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MariaDB upgrade fails on replication slaves

I am having problems when a MariaDB replication slave wants to upgrade its tables after a server was patched. This happens consistently with any sort of OS patching. The system has several slave ...
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Best practice for upgrading MySQL on a master-master setup

Anyone have experience upgrading a master-master setup of MySQL 5.1 to a release version of MySQL while trying to keep at least one server online (in my case we are upgrading to MariaDB 5.5).